team

Грабский Оваким Варленович

Преподаватель

Описание

Преподаватель кафедры Медицинской биохимии и биотехнологии Института Биомедицины и Фармации Российско-Армянского университета

Образование

2015-2019 Российско‑Армянский Университет  Ереван, Армения
Выпускная квалификационная работа на кафедре медицинской биохимии и биотехнологии 
• Научный руководитель: проф. Грачик Вардапетян, к.б.н. Сусанна Тирацуян
• Тема: «Взаимодействие антибактериальных препаратов с гомосерин лактонами методом молекулярной динамики»

2010 ‑ 2015 Российско‑Армянский Университет Ереван, Армения
Диплом (5‑летняя программа) по специальности Биоинженерия и биоинформатика
• Научный руководитель: проф. Грачик Вардапетян
• Тема дипломной работы: “Исследование взаимодействия биологически активных соединений с ДНК методом молекулярной
динамики”

2003 ‑ 2008 Школа при Посольстве Российской Федерации Мехико, Мексика
2001 ‑ 2002 Дёрпсвег гимназия Гамбург, Германия
1997 ‑ 2001 Ереванская основная школа № 55 им. А. Чехова Ереван, Армения

Навыки и умения
Научные интересы
Вычислительная биология, Биоинформатика, Биохимия, Биофизика, Информатика
DevOps AWS, Docker, Ansible, Jenkins, CircleCI
Front‑end Qt, PyQt5, HTML5, Plotly, Dash
Программирование Python, R, JAVA, C++,C, HTML, MySQL, QML, JavaScript, CSS, LATEX
Операционные системы Linux (Ubuntu, Pop OS, instantOS, Fedora, Manjaro, OpenWRT, RouterOS), OSX, Windows
Языки Армянский, Английский (TOEFL iBT:103), Русский, Испанский, Немецкий (ниже среднего)

Опыт работы
2016‑ Российско‑Армянский Университет Ереван, Армения, Ассистент преподавателя
• Спецкурс: Обнаружение патогенов с помощью глубокого обучения, Бакалавриат (2021)
• Спецкурс: Advanced Python Programming Course (на английском языке), бакалавриат (2020)
• Информационные технологии в биологии, бакалавриат (2016‑)

2019 ‑ Исследовательская группа “ИКАР” (руководитель к.б.н. Сусанна Тирацуян) Ереван, Армения, Научный сотрудник
• Тема: «Исследование антибиотикорезистентности и кворум‑сенсинга»

Исследовательские гранты и Награды
2021 AWS Machine Learning Scholarship, Amazon AWS AWS Udacity
2018‑2019 FAST PhD Fellowship Award, Foundation for Armenian Science and Technology (FAST) Ереван, Армения
2019 FEBS Young Scientist Forum Travel Grant, Title: Mechanistic insights of the interaction of taxifolin with transcriptional regulator LasR of Pseudomonas aeruginosa using molecular modeling techniques Краков, Польша (FEBS)
2018 European Student Council Symposium (ESCS) Travel Fellowship Award, Title: Mechanistic insights of the interaction of taxifolin with transcriptional regulator LasR of Pseudomonas aeruginosa using molecular modeling techniques Афины, Греция (ISCB)
2018 PI, Research Grant molbio‑4904 from The Armenian National Science and Education Fund (ANSEF)
Title: Structure Based Virtual Screening: Identification of novel Quorum‑Sensing inhibitors of antibiotic
resistant human pathogen Pseudomonas aeruginosa Ереван, Армения
2019 Lab Finalist, Falling Walls Берлин, Германия
2017 Best Ph.D. student, II Category, Annual Educational Award of the President of the RA Ереван, Армения
2017 Winner of Short Term Conference and Travel Grant, Calouste Gulbenkian Foundation Лиссабон, Португалия
2017 Winner of 13th Student Council Symposium (SCS) Travel Fellowship Award, ISCB Student Council Symposium Travel Fellowship Award Прага, Чехия (ICSB) 
2016 Google Summer of Code, Successfully completed program with the open source project Project National Resource for Network Biology(NRNB): Java support for Deviser, a code generation system for SBML libraries. Google
2016 Конференция «Ломоносов 2016», Лучший Доклад, In silico study of the interaction of morin with LasR ligand‑binding domain by molecular modeling methods
Москва, Россия
2015 2nd Place, Educational Award of the Republic of Armenia Ереван, Армения
2014 Best Bachelor student, I Category, Annual Educational Award of the President of the Republic of Armenia Ереван, Армения
2014 Scholarship winner after N. Sisakian, Scholarship winner after N. Sisakian Ереван, Армения

Семинары и конференции
2021 FEBS 2021 Любляна,Словения
2019 Global Innovation Forum Ереван, Армения
2018 Global Innovation Forum Ереван, Армения
2018 Science and Technology Convergence Forum Ереван, Армения
2018 European Conference on Computational Biology Афины, Греция
2018 European Student Council Symposium (ESCS) Flash Talk Афины, Греция
2018 Moodle Training Ереван, Армения
2018 YSU SSS 5TH CONFERENCE INTERNATIONAL Ереван, Армения
2018 XXV Международная научная конференция студентов, аспирантов и молодых ученых «Ломоносов» 2018 Москва, Россия
2017 2nd Panarmenian Scientific Forum Ереван, Армения
2017 4th International Scientific Conference dedicated to the 70th anniversary of Student Scientific Society of Yerevan State University Ереван, Армения
2017 Workshop on current trends in Medical Conference on Technology, TEMPUS, Greece Патры, Греция
2016 Trends in medical technology and BMF education in Europe and Basics of the computed tomography, TEMPUS Ереван, Армения 
2015 Training at the faculty of “Medical Physics” at the Peter the Great St. Petersburg Polytechnic  University Санкт‑ Петербург, Россия
2014 6th International Pharmaceutical Competitiveness Conference: PHARMA ARMENIA Ереван, Армения
2014 1st German‑Armenian Telemedicine eHealth Workshop Armenia 2014 Ереван, Армения
2013 Training at the faculty of Bioengineering and Bioinformatics at the Moscow State University Москва, Россия
2012 FEBS Workshop on Biochemistry and Molecular Biology Ереван, Армения
2012 Set of trainings organized under Polish Aid Project: “Trainings for professionals on chemicals management and environment protection in Armenia” Ереван, Армения

Повышение квалификации
2021 GitOps Foundations LinkedIn Learning
2021 Writing Emails People Want to Read LinkedIn Learning
2021 Presentation Tips for Pitching to Investors LinkedIn Learning
2021 Succeeding in DevOps LinkedIn Learning
2021 Mistakes to Avoid in Machine Learning LinkedIn Learning
2021 Programming Foundations: Databases LinkedIn Learning
2021 One‑Minute Habits for Success LinkedIn Learning
2021 Doubling Your Productivity LinkedIn Learning
2021 AWS Machine Learning Foundations AWS Udacity
2021 Article submission process and peer review system in an academic journal Elsevier
2021 IPW ‑ Editing an Organization Profile in Scopus Elsevier
2021 Scopus title evaluation process: the procedure for indexing journals, books and conference proceedings Elsevier
2021 Effective search in Scopus and ScienceDirect: basic principles and new opportunities Elsevier
2021 Elsevier professional tools for working with scientific and technical information Elsevier
2021 Elsevier Professional Development Courses Elsevier
2020 Project Management for Researchers AITC
2020 Computational Chemistry AITC
2020 Python for Data Science AITC
2020 Building Resilience LinkedIn Learning
2020 Learning from Failure LinkedIn Learning
2020 Efficient Python Production Workflows LinkedIn Learning
2020 Learning Jenkins LinkedIn Learning
2020 Docker for Developers LinkedIn Learning
2020 Learning Ansible LinkedIn Learning
2020 Learning to Say No LinkedIn Learning
2020 Strategic Thinking LinkedIn Learning
2020 Working with Difficult People LinkedIn Learning
2020 Entrepreneurship Foundations LinkedIn Learning
2020 Using Python for Automation LinkedIn Learning
2020 Docker for Data Scientists LinkedIn Learning
2020 DevOps for Data Scientists LinkedIn Learning
2020 Improving Your Listening Skills LinkedIn Learning
2020 Learning Docker LinkedIn Learning
2020 Building Tools with Python LinkedIn Learning 
2020 Faster Python Code LinkedIn Learning
2020 Unit Testing in Python LinkedIn Learning
2020 Tech Soft Skills: Moving from Developer to Engineering Manager LinkedIn Learning
2020 Managing Anxiety in the Workplace LinkedIn Learning
2020 New Manager Foundations LinkedIn Learning
2020 Productivity Tips: Finding Your Productive Mindset LinkedIn Learning
2020 Critical Thinking LinkedIn Learning
2020 Infectious Disease Outbreak Research: Insights and Trends BrightTalk
2020 Verified DAT256x: Essential Math for Machine Learning: Python Edition, a course of study offered by Microsoft, an online learning initiative of Microsoft Corporation. edX
2019 Verified PH527x: Principles, Statistical and Computational Tools for Reproducible Data Science, a course of study offered by HarvardX,an online learning initiative of Harvard University.edX
2019 Mathematical Foundation for Machine Learning and AI Eduonix 
2018 Verified 60250101: Writing Scientific Papers and Making Presentations in English, a course of study offered by TsinghuaX, an online learning initiative of Tsinghua University through edX.
2016 Verified: DAT210x: Programming with Python for Data Science, a course of study offered by Microsoft, an online learning initiative of Microsoft Corporation through edX. edX
2016 DS101X: Statistical Thinking for Data Science and Analytics, a course of study offered by ColumbiaX, an online learning initiative of Columbia University through edX. edX
2016 Verified: Machine Learning Foundations: A Case Study Approach, University of Washington on Coursera. Certificate earned on January 30, 2016. Coursera
2016 ColWri2.2x: English Grammar and Essay Writing, a course of study offered by BerkeleyX, an online learning initiative of University of California, Berkeley through edX. edX
2015 THE UNIVERSITY OF CALIFORNIA, SAN DIEGO’S ONLINE OFFERING OF Bioinformatics Algorithms (Part 1) Coursera
2015 Verified: CS101.1x: Introduction to Computer Programming, Part 1.,a course of study offered by IITBombayX,an online learning initiative of Indian Institute of Technology Bombay through edX. edX
2015 COMP102.1x: Introduction to Java Programming ‑ Part 1, a course of study offered by HKUSTx, an online learning initiative of The Hong Kong University of Science and Technology through edX. edX
2015 COMP107x: Introduction to Mobile Application Development using Android, a course of study offered by HKUSTx, an online learning initiative of The Hong Kong University of Science and Technology through edX. edX
2015 ColWri2.1x: How to Write an Essay a course of study offered by UC BerkeleyX, an online learning initiative of University of California, Berkeley through edX. edX
2015 DEV210x: Introduction to C++: a course of study offered by Microsoft, an online learning initiative of Microsoft Corporation through edX. edX
2014 UNIVERSITY OF TORONTO’S NON‑CREDIT ONLINE OFFERING OF Bioinformatics Methods I with distinction Coursera 
2014 UNIVERSITY OF TORONTO’S NON‑CREDIT ONLINE OFFERING OF Bioinformatics Methods II with distinction Coursera
2014 Verified: CS50x: Introduction to Computer Science, a course of study offered by HarvardX: an online learning initiative of Harvard University through edX. edX
2013 Coding the Matrix: Linear Algebra through Computer Science Applications Coursera
2013 Stat2.1x: Introduction to Statistics: Descriptive Statistics, an online learning initiative of The University of California At Berkeley through edX. edX
2013 6.00x: Introduction to Computer Science and Programming a course of study offered by MITx, an online learning initiative of The Massachusetts Institute of Technology through edX. edX
2013 Introduction to Computer Science Building a Search Engine through Udacity Udacity 

Внеклассная деятельность
International Conference on Biotechnology and Health Ереван, Армения
Член организационной комиссии 2020
• Приобрел опыт создания сайтов.
• Приобрел опыт автоматизации рассылки писем участникам конференции.

Столетие геноцида армян Ереван, Армения
Волонтер 2015

Профессиональное членство
FAST NextGen Council FAST
Член 2021‑н.в
International Society for Computational Biology: ISCB ISCB
Член 2015‑н.в
The Armenian Association of Biochemists AAB
Член 2018‑н.в
 

Научные интересы

  • Вычислительная биология
  • Биоинформатика,
  • Биохимия
  • Биофизика
  • Информатика

Список основных публикаций

  • Hovakim Grabski et al. “Molecular Modeling of the Interaction of Taxifolin with Quorum Sensing Regulator LasR of Pseudomonas Aeruginosa.” In: 5th International Conference on Nanotechnologies and Biomedical Engineering. Ed. by Ion Tiginyanu et al. Vol. 87. Cham: Springer International Publishing, 2022, pp. 429–438. ISBN: 978-3-030-92327-3 978-3-030-92328-0. DOI: 10.1007/978-3-030-92328-0_56.
  • Hovakim Grabski et al. “Molecular Simulations and Markov State Modeling Reveal Inactive Form of Quorum Sensing Regulator SdiA of Escherichia Coli.” In: IEEE/ACM Trans Comput Biol Bioinform PP (Apr. 20, 2021). ISSN: 1557-9964. DOI: 10.1109/TCBB.2021.3074567. pmid: 33877985.
  • N. Abelyan et al. “In Silico Screening of Flavones and Its Derivatives as Potential Inhibitors of Quorum-Sensing Regulator LasR of Pseudomonas Aeruginosa.” In: Mol Biol 54.1 (Jan. 2020), pp. 134–143. ISSN: 0026-8933, 1608-3245. DOI: 10.1134/S0026893320010021. URL: http://link.springer.com/10.1134/S0026893320010021 (visited on 04/07/2021).
  • S. Ginosyan et al. “In Vitro and in Silico Determination of the Interaction of Artemisinin with Human Serum Albumin.” In: Mol Biol 54.4 (July 2020), pp. 586–598. ISSN: 0026-8933, 1608-3245. DOI: 10.1134/S0026893320040056. URL: http://link.springer.com/10.1134/ S0026893320040056 (visited on 04/08/2021).
  • S. Ginosyan et al. “Molecular Docking of Compounds Modulating Amyloid Peptide Aggregation Schemes.” In: 4th International Conference on Nanotechnologies and Biomedical Engineering. Ed. by Ion Tiginyanu et al. Vol. 77. IFMBE Proceedings. Cham: Springer International Publishing, 2020, pp. 361–366. ISBN: 978-3-030-31865-9 978-3-030-31866-6. DOI: 10.1007/978- 3- 030- 31866- 6_67. URL: http://link. springer.com/10.1007/978-3-030-31866-6_67 (visited on 04/07/2021).
  • S. G. Ginosyan et al. “Mode of Artemisinins’ Action on Oxidative Stress, Genomic and G-Quadruplex DNA.” In: 4th International Conference on Nanotechnologies and Biomedical Engineering. Ed. by Ion Tiginyanu et al. Vol. 77. IFMBE Proceedings. Cham: Springer International Publishing, 2020, pp. 543–548. ISBN: 978-3-030-31865-9 978-3-030-31866-6. DOI: 10.1007/978- 3- 030- 31866- 6_97. URL: http://link. springer.com/10.1007/978-3-030-31866-6_97 (visited on 04/08/2021).
  • H. V. Grabski et al. “Interaction of Quercetin with LasR of Pseudomonas Aeruginosa: Mechanistic Insights of the Inhibition of Virulence Through Quorum Sensing.” In: 4th International Conference on Nanotechnologies and Biomedical Engineering. Ed. by Ion Tiginyanu et al. Vol. 77. IFMBE Proceedings. Cham: Springer International Publishing, 2020, pp. 585–588. ISBN: 978-3-030-31865-9 978-3-030-31866-6. DOI: 10.1007/978-3-030-31866-6_104. URL: http://link.springer.com/10.1007/978-3-030-31866-6_104 (visited on 04/07/2021).
  • Sarah M Keating et al. “SBML Level 3: An Extensible Format for the Exchange and Reuse of Biological Models.” In: Mol Syst Biol 16.8 (Aug. 2020). ISSN: 1744-4292, 1744-4292. DOI: 10.15252/msb.20199110. URL: https://onlinelibrary.wiley.com/doi/10.15252/msb.20199110 (visited on 04/07/2021).
  • S. Ohanyan et al. “Improvement of the Antibacterial Activity of Benzylpenicillin in Combination with Green Silver Nanoparticles Against Staphylococcus Aureus.” In: 4th International Conference on Nanotechnologies and Biomedical Engineering. Ed. by Ion Tiginyanu et al. Vol. 77. IFMBE Proceedings. Cham: Springer International Publishing, 2020, pp. 349–353. ISBN: 978-3-030-31865-9 978-3-030-31866-6. DOI: 10. 1007/978-3-030-31866-6_65. URL: http://link.springer.com/10.1007/978-3-030-31866-6_65 (visited on 04/07/2021).
  • Hovakim Grabski et al. “Interaction of N-3-Oxododecanoyl Homoserine Lactone with Transcriptional Regulator LasR of Pseudomonas Aeruginosa: Insights from Molecular Docking and Dynamics Simulations.” In: F1000Res 8 (Mar. 22, 2019), p. 324. ISSN: 2046-1402. DOI: 10.12688/f1000research.18435.1. URL: https://f1000research.com/articles/8-324/v1 (visited on 04/07/2021).

Дисциплины